Financial fraud in the church is rarely the result of a sophisticated outside heist; it is almost always a “slow leak” from within. When a local ministry loses funds to mismanagement or theft, the damage is catastrophic, not just in terms of the lost and misused donations, but also trust within the congregation and community. We often assume that our church internal controls are enough to protect us, but as recent headlines, like the indictment of an Albuquerque church treasurer for $2 million, remind us, singular authority without oversight is a recipe for disaster.

The threat is more prevalent than most leaders realize. According to Lifeway Research, nearly 1 in 10 Protestant churches has experienced embezzlement. Brotherhood Mutual notes that a vast majority of these cases go undetected for years, often because a lack of oversight made it too easy for funds to be diverted. When fraud occurs, the consequences are a crisis that few small ministries are equipped to survive.

Church Internal Controls: A Shield for Your Team

Many leaders hesitate to implement oversight because they worry it signals a lack of trust. In reality, the opposite is true: church internal controls are an act of kindness toward your staff and volunteers. Most financial mismanagement doesn’t start with a “mastermind” criminal; it starts with an honest person facing extreme financial pressure who finds themselves in a system with zero accountability. As the ECFA’s guide on fraud prevention points out, these systems of internal control are designed to “protect staff and volunteers from unwarranted accusations of financial abuse.” By establishing a professional Standard of Care, you are creating a “witness” for your team. You are ensuring that no single individual has to stand alone in their accountability and that every dollar given by your congregation is protected by a hedge of oversight. These five essential practices are the foundation of a secure, mission-focused financial system.


1. The “Two-Person Rule” for Church Offering Counts

The process of moving funds from the sanctuary to the bank account is the most vulnerable part of a church’s week. Establishing a clear protocol here helps prevent loss and provides peace of mind for the people doing the counting.

  • Always use two people: If possible, don’t allow a single individual to be alone with uncounted cash or checks. If an offering bag comes up $100 short, but you have two people present, they have a witness. No one person is left under a cloud of suspicion.
  • Standardize the count sheet: Use a simple form where counters record cash by denomination and list checks separately. Both individuals should sign and date the sheet.
  • Secure the funds immediately: Use tamper-evident bags and store them in a locked safe until the deposit is made.

2. Segregation of Duties in Church Accounting

In many small churches, one person handles everything from opening the mail to signing the checks and reconciling the bank statement. This “singular authority” is a major red flag for fraud.

  • The “Recorder” vs. the “Approver”: Ideally, the person who enters data into QuickBooks Online should not be the person authorized to sign checks.
  • Third-party oversight: Having an outside church bookkeeper perform the monthly reconciliations provides a “second set of eyes” that protects your treasurer from being the sole person responsible for the numbers.

3. Implement Digital Approval Workflows for Bill Pay

The days of “signing the back of a receipt” are over. Moving to a digital bill-pay system (like those that integrate with QuickBooks Online) creates a permanent, searchable audit trail.

Why this matters for your books: Digital workflows allow a pastor or board member to approve an invoice from their phone before the bookkeeper releases the funds. This ensures that the person approving the expense actually saw the invoice, preventing “accidental” fraud or duplicate payments. This works hand-in-hand with a donor management platform (we love Planning Center) to keep your digital records clean.

4. Monitor Restricted and Designated Funds with Integrity

Few things erode the trust of a congregation faster than seeing a ‘missions’ donation diverted to pay the electric bill. When a donor gives toward a specific cause, they are entrusting you with a piece of their heart for that mission. Stewardship requires a system for tracking Donor-Restricted Funds.

  • Mapping in QuickBooks: Use Classes or Projects to “fence off” building funds or benevolence from the general fund.
  • Transparency Reporting: Provide your board with a monthly report showing the balance of each restricted fund. This honors donor intent and proves your church is doing exactly what it promised with those gifts.

5. Conduct Monthly Board Financial Reviews

Financial transparency shouldn’t be a once-a-year event at the annual meeting. Regular reporting is the best tool for healthy planning and the best deterrent for mismanagement.

What your board should review each month:

  • Statement of Activity (P&L): Compare your actual spending against your budget.
  • Statement of Financial Position (Balance Sheet): Verify your current cash position and fund balances.
  • Bank Reconciliation Reports: Confirm that the “Book Balance” matches the “Bank Balance” exactly.

Wrapping It Up

Church Internal controls aren’t about a lack of trust; they are about providing clarity and protection for the people who serve your church. When your systems are clear and your oversight is consistent, you create a solid foundation that allows your ministry to move forward with confidence.

If your church wants to improve its financial oversight or implement better donor management systems, our team provides specialized bookkeeping and stewardship support built specifically for ministries.

Are you ready to lead with a higher standard of care? You can contact us anytime for a free consultation. We would love to help your ministry move forward with integrity and peace of mind.


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